Influenza treatment and prophylaxis with neuraminidase inhibitors: a review

Introduction

Influenza viruses are ribonucleic acid (RNA) viruses in the family Orthomyxoviridae. There are three subtypes, influenza A, B, and C, with the majority of human infections caused by subtypes A and B. These viruses are responsible for seasonal influenza, causing yearly epidemics in addition to more sporadic, but potentially devastating, pandemics. From the 1970s through 2007, the annual deaths attributable to influenza have ranged from 3,000 to 50,000 in the US. This is likely an underestimate, as many persons who die from influenza may die secondary to complications such as bacterial superinfections or cardiovascular events, in addition to a direct result of the virus itself. The majority of those with more severe illness are the elderly, the very young, those with comorbid conditions, and the immunocompromised. Influenza causes fevers, chills, myalgias, and upper respiratory symptoms. When severe, it can cause lower respiratory tract infections and can lead to acute respiratory distress syndrome (ARDS). As a result of the high attack rate, extensive resources and health care expenditures are dedicated yearly to the detection, prevention, and treatment of influenza.

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Influenza genes and life cycle

Influenza A is a negative sense RNA virus with a low fidelity RNA polymerase. It contains eight gene segments that encode eleven proteins, including hemagglutinin (HA) and neuraminidase (NA) glycoproteins. The influenza A virus uses HA to attach to sialic acid residues on host cells, which then initiates the infection. Once cells are infected, there are direct necrotic effects on the respiratory cell as the virus begins to use the host cell machinery for replication and turns off host cell RNA transcription and translation.3 NA is responsible for virion release and propagation of infection through cleaving sialic acid residues on host cells. Currently, there are 17 known types of HA, with the majority of human disease caused by H1 and H3 and with occasional cases of infection caused by H5, H7, or H9 viruses. There are ten kinds of NA, with N1, N2, and N9 currently circulating in humans. Influenza B is derived from two lineages – the Victoria and Yamagata strains – named for the place of discovery. Influenza B is not responsible for pandemics because it does not have an animal reservoir.

Each year, influenza develops mutations within these genes leading to antigenic drift. When new HA or NA subtypes are introduced via mixing, or within other species (avian or swine), a new subtype is created–this is called antigenic shift and is responsible for pandemics. As influenza evolves within populations, this may also lead to antigenic shift. For example, in the current H7N9 outbreak, evolution within the human host could lead to easier transmission between individuals. In the twenty-first century, there has been one pandemic: the 2009 swine H1N1 strain.

In the replication cycle (Figure 1), influenza first attaches to the host cell by HA, after which the virus is taken into the cell by an endosome. Then the viral RNA replicates and undergoes translation, host genes are suppressed (especially those responsible for immunity), and new virions bud from the surface of the host cell and are released to infect other cells in the host.

Figure 1

Life cycle of an influenza virus.

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Influenza prevention

Current prevention strategies include both vaccination and prophylaxis with antivirals. In the event of novel influenza viruses (such as the current circulating H7N9) or the potential for a new pandemic strain, development of an effective vaccine may be too slow to be effective against spread of infection. Additionally, for some patients who are immunocompromised, vaccination, while beneficial, may not be entirely protective. This is also true for the elderly and infants, who do not mount as aggressive an immune response to vaccination and who are at increased risk for more severe disease. Therefore, other preventive measures and treatment must be effective, widely available, and well tolerated.

Vaccination currently targets the HA glycoprotein. Vaccines are designed to match major HA epitopes within the predicted circulating strains of influenza. Given that these epitope sequences may change yearly, vaccination is only effective for the current circulating strains. In years where the predicted strains do not match the actual circulating strains, or during a pandemic where the HA is novel, vaccination may not be as effective or readily available. Other targets for vaccination are currently being examined, including some sites within the HA that are highly conserved and would therefore lead to the creation of antibodies that can neutralize HA from a wide variety of subtypes.The matrix (M) protein, which affects virion packaging and release, is highly conserved within influenza subtypes and is therefore an attractive target for future influenza vaccine development. Because it would introduce only T cell immunity, it would likely not replace current antibody-inducing vaccines.

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Epidemiology

During the 2012–2013 influenza season in the US, influenza B (>60% Yamagata, >30% Victoria lineages) and influenza A (H3N2 and 2009 H1N1) strains were the major causes of infection.9 According to the US Centers for Disease Control and Prevention (CDC), over 12,000 patients were hospitalized with laboratory-confirmed influenza during 2012–2013.10 That represents approximately only 9% of all cases/hospitalizations within the US, as these numbers are derived from only 15 states. Thus, the estimate for the 2012–2013 season of hospitalized patients is closer to 137,000.10 Of the samples tested by CDC for the entire season, only two H1N1 and two H3N2 samples demonstrated resistance to the neuraminidase inhibitors (NAIs) oseltamivir and zanamivir.10 In addition, from January to September of 2012, there were approximately 307 human influenza cases with a swine variant H3N2 (H3N2v) in the US; this strain did not demonstrate sustained transmission among humans, and the majority of affected persons had prolonged exposure to pigs.10

Within the US Department of Veterans Affairs (VA) population, 27,972 respiratory samples were tested during the 2012–2013 influenza season; of these, 5,110 (18%) were positive: 76% for influenza A and 23% for influenza B. Of these, 261strains (H3N2, H1N1, and B) underwent NA gene sequencing, and none were found to have NAI resistance mutations (Mark Holodniy, personal observation 2013).

In addition to the current seasonal strains, there have been sporadic human cases of avian H5N1 influenza, and most recently, an H7N9 outbreak in the People’s Republic of China. H5N1 is a highly pathogenic avian influenza that causes high mortality in birds11 and has a case fatality rate of approximately 60% in humans.12 Fortunately, H5N1 has not yet developed the ability for efficient person-to-person transmission. Human infection with H7N9 was first recognized in Eastern China13 and has recently caused significant morbidity. As of June 1, 2013, 131 patients were documented to have H7N9 infection, with the majority of patients developing severe pneumonia.13– The Chinese Center for Disease Control and Prevention has instituted the Chinese National Influenza-Like Illness Surveillance Network, which as of April 28, 2013 had collected 20,739 samples and tested them for H7N9. Among those, six were positive for H7N9. The majority of patients were male, and the time from onset of symptoms to presentation was around 13 days. At the time of this writing, there have been 32 deaths attributed to H7N9.13, No cases of H7N9 human-to-human transmission have been documented, although there have been over a thousand close contacts tested. Some patients reported exposure to poultry markets, and in Shanghai some birds tested positive for H7N9.

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Current antiviral medications

There are two classes of drugs used to treat influenza: adamantanes and NAIs. The adamantanes are only effective against influenza A viruses, as they inhibit the M2 protein, which is not coded by influenza B. Adamantanes prevent hydrogen ion influx and prevent the virus from uncoating. There are two drugs that are licensed (amantadine and rimantadine), but given the high degree of resistance among influenza A strains to these drugs, they are not approved for use and are ineffective against influenza B (which lacks the M2 protein).,– In the US, there are currently two licensed NAIs – oseltamivir (Tamiflu™; Genentech Inc, South San Francisco, CA, USA) and zanamivir (Relenza™; GlaxoSmithKline, Research Triangle Park, NC, USA). In addition, laninamivir (Inavir®; Daiichi Sankyo, Tokyo, Japan), which is currently licensed in Japan, is undergoing study in the US.25 Peramivir, which is licensed in Japan (Rapiacta®; Shionogi, Tokyo, Japan) and South Korea (PeramiFlu®; Green Cross, Yongin-Si, South Korea) has also been studied in the US, but is not currently approved. There are other promising targets. The influenza RNA polymerase has multiple sites of enzymatic activity; these could be exploited for future drug development.– Additionally, the nucleoprotein (NP), which among other functions wraps the influenza RNA molecules into viral particles, could also be exploited for prevention; drugs using this strategy are currently being investigated. Other potential targets include the nonstructural proteins (NS1 and NS2) that suppress the host immune response.

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Neuraminidase glycoprotein and inhibition

The NA protein is a homotetrameric glycoprotein with a stalk region and an enzymatically active head. The NA active site cleaves sialic acid at the glycosidic bond on the host cell as well as in respiratory mucus, leading to spread of the virus. NAIs act to prevent viral progeny from being released and thus slow the spread of infection.

The NA active site is highly conserved across both influenza A and B and has many charged amino acids that act to bind the sialic acid residues.,– The majority of these bonds are either hydrogen bonds or charge-charge interactions. The degree of polarity within the active site has an impact on the oral bioavailability of NAIs, because NAIs that have a polar side chain, such as zanamivir, are not orally bioavailable. The active site contains eight functional residues in addition to eleven framework residues., Within the different NA subtypes, there are further differences and similarities, and thus they have been grouped into two families: group 1 contains subtypes NA1, NA4, NA5, and NA8; group 2 contains NA2, NA3, NA6, NA7, and NA9. Most NAs within group 1 contain a region (the “150 loop/cavity”) that rearranges when bound by a drug or sialic acid to open a cavity that could be exploited for development of new agents., Influenza B NA appears to have segregated from influenza A relatively early in its evolution into group II and thus is distinct from influenza A NA groups.

In general, rearrangements necessary for binding of NAIs to influenza B-NA require greater conformational changes than those for influenza A-NA, and this may play a role in the generally better efficacy of NAIs in the treatment of influenza A compared with influenza B. It has also been observed that some mutations leading to substitutions within the NA active site that cause oseltamivir resistance, are only active for group 1 NA.

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Current neuraminidase inhibitors

As mentioned previously, there are two NAIs currently licensed in the US and two other NAIs that are licensed in Japan; we will discuss them individually in more depth.

Zanamivir

Zanamivir was the first NAI to be developed and was licensed in 1999. It exhibits higher affinity to the NA binding site than does the native sialic acid. Given its polarity, it is not well absorbed and is thus delivered as an inhaled agent., After inhalation, 15% of the drug deposits within the lower respiratory tract. Therefore, it can precipitate bronchospasm in patients with pulmonary disease and cannot be used in patients who require mechanical ventilation. It is also available in an intravenous (IV) form for compassionate use and is currently undergoing clinical trials to determine optimal dosing. For influenza treatment, a 10 mg dose is inhaled twice daily (approved for patients older than 7 years) for 5 days, whereas prophylaxis is given once daily for 10 days (although it can be administered for up to 28 days) in patients older than 5 years of age.,38 Zanamivir also appears to have higher activity against influenza B and H1N1 strains than oseltamivir, but slightly lower activity against H3N2 compared with oseltamivir. It remains active against influenza strains that contain the H275Y (or H274Y) neuraminidase mutation. The H275Y mutation is associated with resistance to oseltamivir and peramivir; however, zanamivir, given its more closely retained homology to the natural substrate, is unaffected. In immunocompetent patients, no resistance to zanamivir therapy has been demonstrated, though the N294S (N295S) neuraminidase mutation causes decreased sensitivity to zanamivir.

Oseltamivir

Oseltamivir was developed based on the structure of the active site of zanamivir and is administered as a prodrug that is converted by the liver into its active form. Like zanamivir, it is licensed in the US for both treatment and prophylaxis. Unlike zanamivir, treatment and prophylaxis dosages are based both on weight and renal function. It has been approved for children as young as 1 year. It is relatively well tolerated, with the most common side effect being gastrointestinal upset, which is mitigated by ingestion along with food; however, there have been reports of neurological side effects in children, noted mostly in Japan., It is also available for intravenous administration in patients who cannot tolerate oral dosing. Resistance to oseltamivir has been documented in patients who have been treated with the drug, but it also has been found in patients without exposure to NA inhibitors.

Peramivir

Peramivir is offered only as an intravenous formulation because of its low oral bioavailability., In initial clinical trials, oral peramivir efficacy was no better than placebo, as its absorption was low. However, it achieves very high concentrations in the bloodstream. It has a slightly lower activity against influenza than either zanamivir or oseltamivir. The half-maximal inhibitory concentration (IC50) for influenza B is higher than that for influenza A, but is lower than that for both oseltamivir and zanamivir. In addition to gastrointestinal side effects, peramivir has been linked to neutropenia and occasionally to electrocardiographic (ECG) abnormalities. It is delivered at 600 mg intravenously twice daily for 5 days in adults, and by weight-based dosing for pediatric patients. Like oseltamivir, peramivir resistance is mediated by the H275Y NA mutation.

Laninamivir

Laninamivir is another inhaled NAI, but is currently licensed only in Japan., It is a prodrug, like oseltamivir, and is converted to the active form in the respiratory tract. It requires only one dose because of its long half-life and is highly concentrated within tissues. It is very active against both influenza A and B and has good activity against strains that contain the H275Y NA mutation.

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Mutations in neuraminidase associated with NAI resistance

Numerous excellent reviews have discussed NAI resistance.,,,, NAI resistance is mediated by mutations that change the conformation of the NA active site leading to decreased binding of the NAI to the NA, or by changes in amino acids that change the contact/interaction with the drug. Depending on the drug-NA interaction, different changes can lead to different drug susceptibility or resistance. Though ideally the NAI should be as similar to the natural substrate as possible, some differences are needed to ensure that the drug is absorbed and retained. In general, the majority of resistance has been seen with oseltamivir; relatively few strains have been found to have zanamivir resistance. This may be because zanamivir is more closely related to the natural substrate; however, oseltamivir is also used much more frequently. No laninamivir-resistant strains have yet been described. Please see Table 1 for a partial list of resistance mutations.

Table 1

Neuraminidase inhibitor resistance mutations

As an example of the mechanism whereby resistance develops, when oseltamivir binds to the NA target, the NA undergoes a conformational change., The H274Y (H275Y) and N294S mutations lead to decreased affinity for oseltamivir because they prevent some of the conformational changes from taking place, whereas the R292K lowers affinity for the drug., However, only in N1 is the H274Y mutation significant, whereas the other two mutations are important for N2 viruses., H274Y is not located in the active site; however, it causes repositioning in a side chain and decreased binding to oseltamivir and greater binding to sialic acid. H274Y does not interfere with binding to zanamivir. Also, although oseltamivir binding is inhibited, it appears that sialic acid binding also occurs at a decreased rate compared with the wild-type virus; however, there are compensatory mutations such as R222Q and D344N that allow increased binding of sialic acid.,, The mutations E119V and R292K also confer resistance to oseltamivir: the E119 mutations via decreasing side chain interaction with the drug; and R292 by inhibiting the rotation of the E276 residue. Additionally, R292K decreases affinity to the drug because of decreased interaction with the carboxylate group. It could be inferred that other NA subtypes with H274Y mutation (group 1) would be resistant to oseltamivir and that those within group 2 with the E119V and R292K mutations would be resistant as well. The I222V mutation has also been shown to decrease susceptibility to oseltamivir within N1 influenza strains in vitro and appears to have an added effect when paired with H274Y.,, The McKimm-Breschkin article offers a useful summary of the mechanisms of resistance to NAIs that includes a discussion of structural issues.

Zanamivir and laninamivir are the drugs most similar to the natural target, and therefore resistance is seen less frequently, although it does occur., It is expected that resistance to these two drugs would cause more harm to the virus as it would lead to greater changes and potentially decreased fitness. Peramivir has similarities to both oseltamivir and zanamivir, and thus many of the mutations that confer resistance to either of these drugs lead to cross-resistance with peramivir.

The N294S mutation leads to decreased susceptibility to both zanamivir and oseltamivir and is seen primarily in N1 subtypes. I223R and K mutations can cause resistance to zanamivir.,, The I222 mutations (I222V, I222R, and I222T) have been seen across N subtypes (and also within influenza B) and result primarily in decreased susceptibility to oseltamivir. E119 mutants (E119V, E119I in vivo, E119A/D/G in vitro) can cause decreased susceptibility to different NAIs depending on the substitution, and viral fitness can increase when accompanied by the I222V mutation, as demonstrated in H3N2 isolates.

The majority of mutations to NAIs are caused by mutations within the NA gene itself. Changes to the HA gene and product can also lead to decreased susceptibility to NAIs. These changes in turn decrease the need for NA activity.,

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Transmission and the effect of NAI resistance

In general, influenza is highly infectious and is transmitted via aerosolized respiratory secretions and large droplets and has an incubation period of 1 to 4 days. Persons who are immunocompromised can shed virus for several weeks.,

For the 2012–2013 season, oseltamivir resistance within the US was reported to be approximately 1% for H3N2 and 0% for 2009 H1N1 and influenza B strains in circulation.10 However, in 2008–2009, H1N1 oseltamivir resistance had been quite high and widespread in the US, Europe, and other countries.,, This was not the case in 2009 pandemic H1N1. Additionally, it was once thought that oseltamivir resistance mediated by the H274Y/H275Y mutation led to the decreased viral fitness and transmissibility previously seen in in vitro phenotypic models. This was true from 1999 through 2006. However, during the 2007 season, H1N1 containing the H274Y mutation increased and eventually became the dominant strain in circulation., What was even more alarming was that resistance in these strains arose without any drug pressure or exposure, suggesting that mutated strain was more fit than the nonresistant strains. It has been shown that decreased viral fitness associated with H274Y is mediated by V234M and R22Q NA mutations. However, many H274Y strains have unimpaired transmission. Within the H3N2 strains, the majority of resistance is mediated by E119V and R292K NA mutations; to date, these appear to result in decreased viral fitness and require higher titers in experimental models to cause infection in ferrets.

During the 2009 pandemic, the novel H1N1 virus demonstrated susceptibility to oseltamivir. NAI-resistant strains were reported, the majority of those strains were found in immunocompromised hosts and were thought to have arisen secondarily to increased exposure to oseltamivir and prolonged shedding. Studies demonstrated that transmission of oseltamivir-resistant strains may be slightly less efficient than that of the wild-type virus, but resistant strain viral titers tend to be comparable to that of the wild-type virus in vitro. As discussed in Govorkova’s excellent review, in some animal models, transmissibility of resistant strains is comparable to that in the wild type, though this is somewhat controversial as other studies have found less efficient transmission of resistant strains.

Diagnosis of NAI-resistant influenza mutants

Despite knowledge of mutations associated with resistance to NAIs, there are currently no rapid diagnostics available for clinical laboratories for the detection of strains; the majority of resistance testing is performed at surveillance laboratories. The two main types of diagnostic tests include genotypic and phenotypic assays.

Phenotypic assays rely on culture and are sometimes inaccurate. The sialic acid structures within the cell types used do not bind HA uniformly; some have even lower HA binding in the presence of NAIs, which decreases the utility of NA activity as a measure of antiviral activity., Therefore, other phenotypic assays that measure NAI enzyme inhibitory activity are more accurate. However, though NAI inhibition may be measured accurately, it does not necessarily correlate with viral replication. Currently, most of these tests utilize either chemiluminescent or fluorescent read-out, and both require that the virus be cultured first. Chemiluminescent assay is less expensive but requires a higher viral titer for improved accuracy, whereas the fluorescent assay is generally thought to be more accurate. Although there are some limitations to phenotypic assays, they are able to detect the effect of both known and unknown resistance mutations and provide a sensitivity profile for the antiviral drug because they measure inhibitory concentration of the drug., Kits are commercially available and contain reagents, but still require culture of the virus.67 Finally, some studies have combined phenotypic assays with sequencing.

Genotypic resistance testing is rapid and can be done without viral culture. Current methodologies used for analyzing the influenza NA gene include the polymerase chain reaction (PCR) with Sanger sequencing, next generation sequencing (NGS), real-time PCR (RT PCR), probe hybridization technologies, and single nucleotide polymorphism analysis, among others., The disadvantages include cost (although the methodologies mentioned are significantly less expensive than phenotypic assays) and the potential that genotypic resistance does not always correlate with phenotypic resistance. PCR and population sequencing are used most frequently, although they can be time consuming depending on whether population-based sequencing or clonal analysis is performed. Given that novel mutations can be discovered through whole gene sequencing, assays using PCR with sequencing are attractive applications. RT PCR is faster and is used in clinical laboratories for diagnosis of influenza as well as for subtyping. Detection of resistance mutations can be done utilizing a number of methods, such as allele-specific PCR for specific single nucleotide polymorphisms or probe hybridization

Combination therapy

Given that there are currently only two NAIs licensed in the US, and that there is increasing concern for resistance, the use of combination therapy is promising as it raises the potential of decreasing emerging resistance and increasing efficacy of therapy., In addition, combination therapy may help in instances in which treatment is started later or in hosts with compromised immune systems. Some initial combinations that have been evaluated have been combinations of NAIs themselves, whereas others have investigated combinations of novel NAIs and novel therapies

Future neuraminidase inhibitor development

Given the limitations of current drug therapy (for instance, modality of administration and resistance), new therapeutics are needed. In addition to NAIs, other agents are being investigated that have other viral targets, as well as recent studies of other combination therapies., Quantitative structural relationship models have been used to model new potential NAIs.

Zanamivir analogs, including laninamivir, have been synthesized. With the discovery of the 150 loop/cavity, other compounds are currently being evaluated that would lead to tighter binding of the NA and thus to greater efficacy. Given that NA exists on the surface of virions in tetramers, there is increasing interest in finding compounds that would link multiple NAs on the surface of virions, ie, multivalent preparations that may exhibit greater binding affinity and potentially improved pharmacokinetics, in addition to increased potency. There has also been interest in developing derivatives of peramivir. In addition, benzoic acid is a relatively inexpensive chemical compound that could be utilized for future NAI synthesis. Because current NAIs are expensive to produce and require long manufacturing times, synthesis of lower cost benzoic acid derivatives having anti-influenza activity could be quite useful in pandemics

Conclusion

In summary, influenza is a respiratory pathogen that causes significant morbidity and mortality globally. There have been four pandemics in the last 100 years, and the threat of a new pandemic is ever present. Vaccination remains the most important cornerstone of prevention. However, depending on vaccination rates, vaccine effectiveness (based on vaccine composition and the population vaccinated), the amount of protection afforded varies considerably. Therefore, antiviral medications such as the NAIs are increasingly important both for treatment and for prophylaxis of vulnerable populations.

Medical fitness ,Prophylactic treatment in itself

Sunday, 13 July 2014